Status: In production
MBAT provides a workflow environment bringing together online resources, a user’s image data and biological atlases in a concise, unified and intuitive workspace. MBAT is written in java so it is platform independent and is extensible through its plugin architecture.
Features:
- MBAT is designed with a Search Workspace to enable users to submit a query to multiple databases simultaneously.
- The Registration Workspace performs 2D and 3D image alignment (spatial registration).
- The Viewer Workspace displays and composites images and image volumes using high performance graphics hardware.
- A major feature of the Viewer Workspace is the Atlas Viewer module; a generic volumetric atlas viewer. This module allows navigation and interrogation of volumetric atlases.
To access this tool: http://www.loni.ucla.edu/Software/MBAT
May I visualize my own data using MBAT?
MBAT is designed to display multiple images simultaneously. It can open common image formats including, jpg, tiff, analyze and nifti.
How can I develop plugin modules for MBAT?
Detailed instructions for writing your own plugins can be found at:
http://www.loni.ucla.edu/twiki/bin/view/MouseBIRN/CreatingPlugins
What content is available in MBAT?
Current Datasources accessible through MBAT
- Allen Brain Atlas
- GenSat
- UCSD Cell Center Database & Animal Imaging Database
- GeneNetwork
Literature Searches including:
- PubMed
- GoPubMed
- Google Scholar
- IEEE Explorer
- Go3R
- Springer Link
Atlases Available for Download:
- Neonatal (P0) Nissl Mouse Brain Atlas
- Neonatal (P0) MRI Mouse Brain Atlas
- Mouse Minimum Deformation Atlas
- MRI Mouse Brain Atlas
- µMRI Atlases of Mouse Development
- Quail Developmental Atlas
online: NeuroTerrain Mouse Brain Atlas
Is there Mouse BIRN data?
MouseBIRN data can be found here. No new data is being added to this archive.
